Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-95/megassr/results/hub_GCF_025990755.1/fasta/hub_GCF_025990755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              51
Total size of examined sequences (bp):           2071506
Total number of identified SSRs:                 12
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	1	1
AAGTT	1				1
ACATT	2				2
ATCAA	1				1
TTATT	1				1
TCACTA	1				1
TCCTTA	1				1
TTCATC		1			1
TTCTTA	1				1
TTCTTT	1				1
TTTTCC			1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
AAAAT/ATTTT	1				1
AAATC/ATTTG	1				1
AACTT/AAGTT	1				1
AATGT/ACATT	2				2
AAAAAG/CTTTTT	1				1
AAAAGG/CCTTTT			1		1
AAGAAT/ATTCTT	1				1
AAGATG/ATCTTC		1			1
AAGGAT/ATCCTT	1				1
ACTATC/AGTGAT	1				1
