Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-82/megassr/results/hub_GCF_025599785.1/fasta/hub_GCF_025599785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              100
Total size of examined sequences (bp):           5767760
Total number of identified SSRs:                 114
Number of SSR containing sequences:              53
Number of sequences containing more than 1 SSR:  29
Number of SSRs present in compound formation:    7


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	18
4	2
5	10
6	82

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
GC	-	-	-	2																					2
CAA	-	-														1								1	2
CAC	-	-	2																						2
CCG	-	-	1																						1
CGC	-	-	4																						4
CGG	-	-	1																						1
CTG	-	-	1																						1
GAA	-	-	1																						1
GCC	-	-		1																					1
GCG	-	-	2																						2
GGC	-	-	1																						1
GGT	-	-	1																						1
TTG	-	-														1									1
AACC	-				1																				1
GTTG	-				1																				1
AAGCC	1																								1
CAAAG	1																								1
CGCCG	2																								2
CGGCG	1																								1
CGGGG	1																								1
GCGCC	1																								1
GCGGC	1																								1
GGCAG	1																								1
GGGCG	1																								1
AAAGCC			1																						1
AAAGTC	1	1				1																			3
AAGAGC					1																				1
AGATCA										1															1
AGCAAA	1																								1
AGCAAG	2	1		2																					5
ATCAAG			1																						1
CAACGG			1																						1
CAAGAT					1		1		1																3
CAGGAA	1																								1
CAGGCA	1																								1
CAGGCC	1																								1
CAGGGC	1																								1
CATCGC	1																								1
CATTGC			1																						1
CCAAAG	1																								1
CCAGGC	1																								1
CCCAAG		1																							1
CCCAGG	1																								1
CCCGAA			1																						1
CCCTTG	1																								1
CCTGGC	1																								1
CCTTGA	1																								1
CCTTGC				1																					1
CGCTGA	1																								1
CGGCAA	2																								2
CGTTGC					1																				1
CTCTTG	1			1																					2
CTGGGC	1																								1
CTGTTC	1																								1
CTTGCC	1																								1
CTTGCT						1																			1
CTTTTG	1																								1
GACTTT			1								1														2
GAGACA			1																						1
GATCAA							1																		1
GCACCG	1																								1
GCCAAA								1	1																2
GCCAGG	1																								1
GCCGAT	1																								1
GCCGTT							1																		1
GCTTTT		1																							1
GGCAAG			1																						1
GGCCAT	1																								1
GGCGGT					1																				1
GGGCAA	1																								1
GGGCCT	1																								1
GGGCTG		1																							1
GGGCTT	1																								1
GGTCTG	1																								1
GGTTCG				1																					1
GGTTGT	1																								1
GTTGTA	1																								1
TCAAAG		1																							1
TCAAGA										1															1
TCAAGG	1																								1
TCTTGA	1																								1
TCTTGC	2								1																3
TGATCT			1																						1
TGCCGT				1																					1
TGGGCA		1																							1
TGTTGC									1																1
TTGATC							1				1														2
TTGCTC										1															1
TTGTAG			1																						1
TTTGAC				1		1																			2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
CG/CG	-	-	-	2																					2
AAC/GTT	-	-														2								1	3
AAG/CTT	-	-	1																						1
ACC/GGT	-	-	3																						3
AGC/CTG	-	-	1																						1
CCG/CGG	-	-	9	1																					10
AACC/GGTT	-				2																				2
AAAGC/CTTTG	1																								1
AAGCC/CTTGG	1																								1
AGGGC/CCCTG	1																								1
CCCCG/CGGGG	2																								2
CCGCG/CGCGG	5																								5
AAAAGC/CTTTTG	2	1																							3
AAAGCC/CTTTGG	1		1					1	1																4
AAAGTC/ACTTTG	1	2	1	1		2					1														8
AACAGC/CTGTTG									1																1
AACAGG/CCTGTT	2																								2
AACCAC/GGTTGT	1																								1
AACCCG/CGGGTT			1	1																					2
AACGGC/CCGTTG	2		1	1	1		1																		6
AACTAC/AGTTGT	1		1																						2
AAGAGC/CTCTTG	5	1		3	1	1			1	1															13
AAGATC/ATCTTG	1		2		1		3		1	2	1														11
AAGCCC/CTTGGG	1	1																							2
AAGGGC/CCCTTG	3		1	1																					5
AAGGTC/ACCTTG	2																								2
AATGGC/ATTGCC			1																						1
ACAGAG/CTCTGT			1																						1
ACAGGC/CCTGTG	1																								1
ACCCAG/CTGGGT	1																								1
ACCGCC/CGGTGG					1																				1
ACCGGC/CCGGTG	1																								1
ACGCTG/AGCGTC	1																								1
AGCCCC/CTGGGG		1																							1
AGGCCC/CCTGGG	5																								5
AGGGCC/CCCTGG	3																								3
ATCGCC/ATGGCG	1																								1
ATCGGC/ATGCCG	1																								1
ATGCCC/ATGGGC		1																							1
ATGGCC/ATGGCC	1																								1
