Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-81/megassr/results/hub_GCF_025599755.1/fasta/hub_GCF_025599755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              136
Total size of examined sequences (bp):           5815217
Total number of identified SSRs:                 102
Number of SSR containing sequences:              62
Number of sequences containing more than 1 SSR:  27
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	3
3	16
4	2
5	9
6	71

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																											1	1
GC	-	-	-	3																																									3
CAC	-	-	2																																										2
CAG	-	-	1																																										1
CCG	-	-	1																																										1
CGC	-	-	4																																										4
GCC	-	-	1																																										1
GCG	-	-	1																																										1
GCT	-	-	1																																										1
GGC	-	-		1																																									1
GTG	-	-	1																																										1
GTT	-	-										1			1																														2
TTG	-	-													1																														1
CAAC	-			1																																									1
GGTT	-				1																																								1
AAGCC		1																																											1
CGCCG	2																																												2
CGGCG	1																																												1
CGGGG	1																																												1
CTGCC	1																																												1
GCCGC	1																																												1
GGCGC	1																																												1
GGGCG	1																																												1
AAAGTC	1		1																																										2
AAGGGC			1																																										1
ACAACT				1																																									1
ACCGCC				1																																									1
AGCAAG	2	2	1	1					1																																				7
ATCAAG		1																																											1
ATGGCC	1																																												1
CAAGAT					1				1	1																																			3
CAAGCC	1																																												1
CAATGG						1																																							1
CACAAC		1																																											1
CAGGCC	1																																												1
CAGGGC	1																																												1
CATCGC	1																																												1
CCAAAG	1																																												1
CCCAAG		1																																											1
CCCGAA		1		1																																									2
CCCGAC	1																																												1
CCCTTG	1																																												1
CCTGGC	1																																												1
CCTGGG	1																																												1
CCTTGA	1																																												1
CGGCAA									1																																				1
CGTTGC							1		2																																				3
CTCTTG	1																																												1
CTGCTA	1																																												1
CTGGGC	1																																												1
CTGTTC	1																																												1
CTTGCC	1																																												1
CTTTTG	1	1																																											2
GACTTT							1																																						1
GATCAA										2																																			2
GCACCG	1																																												1
GCCAAA					1																																								1
GCCAGG	1																																												1
GCCGAT	1																																												1
GCTTTT	1																																												1
GGCCTG	1																																												1
GGGCAA	1																																												1
GGGCCT	1																																												1
GGGCTG		1																																											1
GGGTTC						1																																							1
TCAAAG	1																																												1
TCAAGA											1																																		1
TCAAGG	1																																												1
TCTTGC		1			1																																								2
TGAGCC	1																																												1
TGCCCT				1																																									1
TGCCGT	1																																												1
TGGCTT		1																																											1
TGTTCC	1																																												1
TGTTGC					1																																								1
TTGATC						1		1																																					2
TTTGAC				1																																									1
TTTTGC	1																																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																											1	1
CG/CG	-	-	-	3																																									3
AAC/GTT	-	-										1			2																														3
ACC/GGT	-	-	3																																										3
AGC/CTG	-	-	2																																										2
CCG/CGG	-	-	7	1																																									8
AACC/GGTT	-			1	1																																								2
AAGCC/CTTGG		1																																											1
AGGGC/CCCTG	1																																												1
CCCCG/CGGGG	2																																												2
CCGCG/CGCGG	5																																												5
AAAAGC/CTTTTG	3	1																																											4
AAAGCC/CTTTGG	1	1			1																																								3
AAAGTC/ACTTTG	2		1	1			1																																						5
AACAGC/CTGTTG					1																																								1
AACAGG/CCTGTT	2																																												2
AACCAC/GGTTGT		1																																											1
AACCCG/CGGGTT		1		1		1																																							3
AACGGC/CCGTTG	1						1		3																																				5
AACTAC/AGTTGT				1																																									1
AAGAGC/CTCTTG	3	3	1	1	1				1																																				10
AAGATC/ATCTTG		1			1	1		1	1	3	1																																		9
AAGCCC/CTTGGG	1	1																																											2
AAGGGC/CCCTTG	3		1	1																																									5
AAGGTC/ACCTTG	2																																												2
AATGGC/ATTGCC						1																																							1
ACCCCG/CGGGGT	1																																												1
ACCGCC/CGGTGG				1																																									1
ACCGGC/CCGGTG	1																																												1
ACTGCT/AGCAGT	1																																												1
AGCCCC/CTGGGG		1																																											1
AGCCTG/AGGCTC	1																																												1
AGGCCC/CCTGGG	5																																												5
AGGGCC/CCCTGG	3																																												3
ATCGCC/ATGGCG	1																																												1
ATCGGC/ATGCCG	1																																												1
ATGGCC/ATGGCC	1																																												1
