Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-89/megassr/results/hub_GCF_025599655.1/fasta/hub_GCF_025599655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              60
Total size of examined sequences (bp):           6430587
Total number of identified SSRs:                 42
Number of SSR containing sequences:              23
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	3
4	1
5	2
6	34

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																													1	1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																													1
CA	-	-	-	1																																											1
CG	-	-	-	1																																											1
GC	-	-	-	1																																											1
AGCC	-							1																																							1
CTGGC	1																																														1
GCCCG	1																																														1
AAAGCC		1																																													1
AAGCCA		1																																													1
AGCAGG		1																																													1
CAAAAG	1	2																																													3
CAAAGG			1							1																																					2
CAGCGC	1																																														1
CCATCG	1																																														1
CCCGGA	1																																														1
CGGTGC	1																																														1
CTGCTC	1																																														1
GCACCT				1																																											1
GCCCAG	1																																														1
GCCCCG	1																																														1
GCTCTG							1																																								1
GCTTTT	5	4																																													9
GGCGGT	1																																														1
GGTCAG	1																																														1
GGTGCA							1																																								1
GGTGCC	1																																														1
TGCCTT	1																																														1
TGCTCT	1	1																																													2
TTAGGG	1																																														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																												1	2
AC/GT	-	-	-	1																																											1
CG/CG	-	-	-	2																																											2
AGCC/CTGG	-							1																																							1
AGGCC/CCTGG	1																																														1
CCCGG/CCGGG	1																																														1
AAAAGC/CTTTTG	6	6																																													12
AAAGCC/CTTTGG		2																																													2
AAAGGC/CCTTTG	1		1							1																																					3
AACCCT/AGGGTT	1																																														1
AAGAGC/CTCTTG	1	1																																													2
ACCCGG/CCGGGT	1																																														1
ACCCTG/AGGGTC	1																																														1
ACCGCC/CGGTGG	1																																														1
ACCGGC/CCGGTG	2																																														2
ACCTGC/AGGTGC				1			1																																								2
AGAGCC/CTCTGG							1																																								1
AGCAGG/CCTGCT	1	1																																													2
AGCGCC/CGCTGG	1																																														1
AGGCCC/CCTGGG	1																																														1
ATCGCC/ATGGCG	1																																														1
CCCCGG/CCGGGG	1																																														1
