Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-88/megassr/results/hub_GCF_025599615.1/fasta/hub_GCF_025599615.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              66
Total size of examined sequences (bp):           6577480
Total number of identified SSRs:                 34
Number of SSR containing sequences:              23
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	1
5	2
6	30

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
GC	-	-	-	1																1
GCCAG	1																			1
GGCGC	1																			1
AAAAGC	2																			2
AGCAAA		1																		1
AGCAAG	1									1										2
AGCGGC	1																			1
ATCCCA			1																	1
CAAAAG	5	1																		6
CCATCG	1																			1
CCCACT	1																			1
CCTGCA				1																1
CGGCAC	1																			1
GCAAAG	1																			1
GCACCG	1																			1
GCAGGT					1															1
GCCCAA	1																			1
GCGCTG	1																			1
GGCCAG	1																			1
GGCGCA	1																			1
GGCTTT		1																		1
GTGCCG	1																			1
TGCCTT	1																			1
TGCTTT	1																			1
TTAGGG	1																			1
TTTTGC	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
CG/CG	-	-	-	1																1
AGGCC/CCTGG	1																			1
CCGCG/CGCGG	1																			1
AAAAGC/CTTTTG	9	2																		11
AAAGCC/CTTTGG		1																		1
AAAGGC/CCTTTG	2																			2
AACCCT/AGGGTT	1																			1
AAGAGC/CTCTTG	1									1										2
AAGCCC/CTTGGG	1																			1
AATCCC/ATTGGG			1																	1
ACCGGC/CCGGTG	3																			3
ACCTGC/AGGTGC				1	1															2
ACTCCC/AGTGGG	1																			1
AGCGCC/CGCTGG	1																			1
AGCGGC/CCGCTG	1																			1
AGGCGC/CCTGCG	1																			1
AGGGCC/CCCTGG	1																			1
ATCGCC/ATGGCG	1																			1
