Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-93/megassr/results/hub_GCF_025561545.1/fasta/hub_GCF_025561545.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           2702569
Total number of identified SSRs:                 6
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
4	1
5	2
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	total
TTAT	-	1	1
ATTTA	1		1
TTTAA	1		1
AACAGC	1		1
AGAAAT		1	1
TCGGCA	1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	total
AAAT/ATTT	-	1	1
AAATT/AATTT	2		2
AAATAG/ATTTCT		1	1
AACAGC/CTGTTG	1		1
ATCGGC/ATGCCG	1		1
