Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-91/megassr/results/hub_GCF_025561465.1/fasta/hub_GCF_025561465.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           2682239
Total number of identified SSRs:                 14
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
TA	-	-	-	1	1
AAC	-	-	1		1
ATGAC	1				1
ATTAA	1				1
GATGC	1				1
AAAAGT	1				1
ATGATA	1				1
GATGCC	2				2
GCAGAT	2				2
GCCGAT		1			1
TTGCTG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
AAC/GTT	-	-	1		1
AAATT/AATTT	1				1
ACATG/ATGTC	1				1
ATCGC/ATGCG	1				1
AAAAGT/ACTTTT	1				1
AACAGC/CTGTTG	1				1
AATGAT/ATCATT	1				1
AGATGC/ATCTGC	2				2
ATCGGC/ATGCCG	2	1			3
