Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-94/megassr/results/hub_GCF_025561445.1/fasta/hub_GCF_025561445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           2815114
Total number of identified SSRs:                 7
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	3
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	total
ATTAA	1	1
ATTTT	1	1
TTTGA	1	1
AGCTGA	1	1
GATGCC	1	1
GCTGAC	1	1
TTTTGT	1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	total
AAAAT/ATTTT	1	1
AAATC/ATTTG	1	1
AAATT/AATTT	1	1
AAAAAC/GTTTTT	1	1
AAGCTG/AGCTTC	1	1
ACGCTG/AGCGTC	1	1
ATCGGC/ATGCCG	1	1
