Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-84/megassr/results/hub_GCF_025560925.1/fasta/hub_GCF_025560925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2449987
Total number of identified SSRs:                 5
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
5	3
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
TTC	-	-	1	1
AAAAC	1			1
TGAAA	1			1
TTTTA	1			1
ATCAGA	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAG/CTT	-	-	1	1
AAAAC/GTTTT	1			1
AAAAT/ATTTT	1			1
AAATG/ATTTC	1			1
AATCAG/ATTCTG	1			1
