Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-79/megassr/results/hub_GCF_025560845.1/fasta/hub_GCF_025560845.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           2706864
Total number of identified SSRs:                 10
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	1		1
TA	-	-	-		1	1
AAT	-	-		1		1
AAAAT	1					1
AATAA	1					1
TGTTA	1					1
TTTAA	1					1
AAATTC	1					1
TATAGT	1					1
TCTGCA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	1	1	2
AAT/ATT	-	-		1		1
AAAAT/ATTTT	2					2
AAATT/AATTT	1					1
AACAT/ATGTT	1					1
AAATTC/AATTTG	1					1
AACTAT/AGTTAT	1					1
AGATGC/ATCTGC	1					1
