Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-87/megassr/results/hub_GCF_025558765.1/fasta/hub_GCF_025558765.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           2639354
Total number of identified SSRs:                 14
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	1
5	1
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AT	-	-	-	1								1
TA	-	-	-								1	1
TC	-	-	-	1								1
AGA	-	-	1									1
ATTTT	1											1
GATGCC	3	1										4
GCCGAT	1	1										2
GTAACA	1											1
TCTGCA	1											1
TTTTGT			1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG/CT	-	-	-	1								1
AT/AT	-	-	-	1							1	2
AAG/CTT	-	-	1									1
AAAAT/ATTTT	1											1
AAAAAC/GTTTTT			1									1
AACAGT/ACTGTT	1											1
AGATGC/ATCTGC	1											1
ATCGGC/ATGCCG	4	2										6
