Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-96/megassr/results/hub_GCF_025558665.1/fasta/hub_GCF_025558665.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2484775
Total number of identified SSRs:                 11
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
5	5
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	2	2
AAAAG	1				1
AAATT	1				1
AATTA	1				1
ATTAT	1				1
TAAAT	1				1
TAATGA	1				1
TATAGC	1				1
TGTAGT	1				1
TTCTTT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
AAAAG/CTTTT	1				1
AAATT/AATTT	3				3
AATAT/ATATT	1				1
AAAAAG/CTTTTT	1				1
AACTAC/AGTTGT	1				1
AATGAT/ATCATT	1				1
AGCTAT/AGCTAT	1				1
