Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-67/megassr/results/hub_GCF_025558625.1/fasta/hub_GCF_025558625.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2532921
Total number of identified SSRs:                 14
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
TC	-	-	-	1	1
AAAAT	1				1
ATATA	1				1
ATTTT	1				1
TAAAA	1				1
GCAGAT		1	1		2
GCATCA	2				2
TCAGCA	2	1			3
TCAGCG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	1	1
AT/AT	-	-	-	1	1
AAAAT/ATTTT	3				3
AATAT/ATATT	1				1
ACGCTG/AGCGTC	1				1
AGATGC/ATCTGC		1	1		2
AGCATC/ATGCTG	4	1			5
