Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-88/megassr/results/hub_GCF_025558605.1/fasta/hub_GCF_025558605.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2225204
Total number of identified SSRs:                 32
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	7
4	2
5	3
6	18

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	2	2
ATA	-	-	1		1
ATC	-	-	1		1
ATT	-	-	2		2
GTA	-	-	1		1
TTA	-	-	1		1
TTG	-	-	1		1
AGAA	-	1			1
ATAA	-	1			1
AAAAT	1				1
AAATT	1				1
CAATA	1				1
ATATTA	1				1
ATCTGA		2			2
GCTTTT	1				1
GTCTGA	5	1			6
TAAAAA	1				1
TCTGAG	5	2			7

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
AAC/GTT	-	-	1		1
AAT/ATT	-	-	4		4
ACT/AGT	-	-	1		1
ATC/ATG	-	-	1		1
AAAG/CTTT	-	1			1
AAAT/ATTT	-	1			1
AAAAT/ATTTT	1				1
AAATT/AATTT	1				1
AATAC/ATTGT	1				1
AAAAAT/ATTTTT	1				1
AAAAGC/CTTTTG	1				1
AATATT/AATATT	1				1
AATCTG/AGATTC		2			2
ACTCAG/AGTCTG	10	3			13
