Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-81/megassr/results/hub_GCF_025558565.1/fasta/hub_GCF_025558565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2212672
Total number of identified SSRs:                 14
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	3
5	3
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AT	-	-	-	2										1	3
TA	-	-	-	3	1										4
AAT	-	-	2												2
ATT	-	-	1												1
GTATT	1														1
TAAAA	1														1
TTATT	1														1
TTTAAT	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AT/AT	-	-	-	5	1									1	7
AAT/ATT	-	-	3												3
AAAAT/ATTTT	2														2
AATAC/ATTGT	1														1
AAAATT/AATTTT	1														1
