Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-80/megassr/results/hub_GCF_025558525.1/fasta/hub_GCF_025558525.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2298032
Total number of identified SSRs:                 14
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	4
5	3
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	2		2
TA	-	-	-	3	1	4
AAT	-	-	2			2
ATT	-	-	1	1		2
GTATT	1					1
TAAAA	1					1
TTATT	1					1
TTTAAT	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	5	1	6
AAT/ATT	-	-	3	1		4
AAAAT/ATTTT	2					2
AATAC/ATTGT	1					1
AAAATT/AATTTT	1					1
