Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-79/megassr/results/hub_GCF_025558445.1/fasta/hub_GCF_025558445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2261574
Total number of identified SSRs:                 15
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	4
5	4
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1			1
TA	-	-	-	2		2	4
AAT	-	-	2				2
AGA	-	-	1				1
ATT	-	-	1				1
GTATT	1						1
TAAAA	1						1
TATTT		1					1
TTATT	1						1
TCTGAG	1						1
TTTAAT	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	3		2	5
AAG/CTT	-	-	1				1
AAT/ATT	-	-	3				3
AAAAT/ATTTT	2	1					3
AATAC/ATTGT	1						1
AAAATT/AATTTT	1						1
ACTCAG/AGTCTG	1						1
