Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-84/megassr/results/hub_GCF_025558265.1/fasta/hub_GCF_025558265.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           2751027
Total number of identified SSRs:                 8
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	1	1
AAAAT	1				1
AGAGA	1				1
GATGCC	1				1
GCAGAT	1		1		2
GTTGTG	1				1
TATTAA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
AAAAT/ATTTT	1				1
AAGAG/CTCTT	1				1
AACCAC/GGTTGT	1				1
AATATT/AATATT	1				1
AGATGC/ATCTGC	1		1		2
ATCGGC/ATGCCG	1				1
