Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-82/megassr/results/hub_GCF_025558225.1/fasta/hub_GCF_025558225.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           2706928
Total number of identified SSRs:                 10
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
5	2
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
TTG	-	-	1	1
AAAAT	1			1
TGAAT	1			1
GATGCC	3			3
GCAGAT	1			1
GCCGAC	1			1
GCTGAC	1			1
GTTGTG		1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAC/GTT	-	-	1	1
AAAAT/ATTTT	1			1
AATTC/AATTG	1			1
AACCAC/GGTTGT		1		1
ACGCCG/CGGCGT	1			1
ACGCTG/AGCGTC	1			1
AGATGC/ATCTGC	1			1
ATCGGC/ATGCCG	3			3
