Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-80/megassr/results/hub_GCF_025558185.1/fasta/hub_GCF_025558185.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           2818719
Total number of identified SSRs:                 6
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
4	1
5	1
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
AAC	-	-	1	1
AAAT	-	1		1
TTTCA	1			1
GACGCA	1			1
GATGCC		1		1
GCAGAC	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAC/GTT	-	-	1	1
AAAT/ATTT	-	1		1
AAATG/ATTTC	1			1
ACGCAG/CGTCTG	2			2
ATCGGC/ATGCCG		1		1
