Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-79/megassr/results/hub_GCF_025558115.1/fasta/hub_GCF_025558115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2716119
Total number of identified SSRs:                 12
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	1
5	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	1	1
AAC	-	-	1		1
TGA	-	-	1		1
AAAT	-		1		1
TGAAT	1				1
ATGATA		1			1
GACGCC		1			1
GATGCA		1			1
GATGCC	1				1
GTACAC	1				1
GTTGTG	1				1
TATTTC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
AAC/GTT	-	-	1		1
ATC/ATG	-	-	1		1
AAAT/ATTT	-		1		1
AATTC/AATTG	1				1
AAATAG/ATTTCT	1				1
AACCAC/GGTTGT	1				1
AATGAT/ATCATT		1			1
ACACGT/ACGTGT	1				1
ACGCCG/CGGCGT		1			1
AGATGC/ATCTGC		1			1
ATCGGC/ATGCCG	1				1
