Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-119/megassr/results/hub_GCF_025548435.1/fasta/hub_GCF_025548435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              170
Total size of examined sequences (bp):           5597448
Total number of identified SSRs:                 43
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	19
5	8
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	4	1	5
GC	-	-	-	1		1
CAG	-	-	1			1
CCG	-	-	3			3
CGC	-	-	1			1
CGG	-	-	4			4
CTG	-	-	2			2
GAC	-	-	1			1
GCA	-	-	1			1
GCC	-	-		1		1
GCG	-	-	3			3
GGT	-	-	1			1
GTC	-	-	1			1
ATAAA	1					1
CCGCG	1					1
CGGGC	1					1
CGTGG	1					1
GCGCC	1					1
GGCGC	1					1
TATTG	1					1
TTATT	1					1
CACCAG	1					1
CCGGAG		1				1
CGACTC	1					1
CGACTT	1					1
GATACC	1					1
GCCGCT	1					1
GTCGGA	2					2
TCTTCG	1					1
TTCCAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	5	1	6
ACC/GGT	-	-	1			1
ACG/CGT	-	-	2			2
AGC/CTG	-	-	4			4
CCG/CGG	-	-	11	1		12
AAAAT/ATTTT	2					2
AATAC/ATTGT	1					1
ACGCC/CGTGG	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACCGAT/ATCGGT	1					1
ACTCCG/AGTCGG	3					3
AGCCGG/CCGGCT		1				1
AGCGGC/CCGCTG	1					1
