Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-118/megassr/results/hub_GCF_025548405.1/fasta/hub_GCF_025548405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              178
Total size of examined sequences (bp):           5720206
Total number of identified SSRs:                 43
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	6
2	6
3	17
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2					2			1						1	6
CG	-	-	-	3	1																												4
GC	-	-	-	1																													1
TG	-	-	-		1																												1
CAG	-	-	1																														1
CCG	-	-	2																														2
CGC	-	-	1																														1
CGG	-	-	2																														2
CTG	-	-	1																														1
GAC	-	-	1																														1
GCA	-	-	2																														2
GCC	-	-	1																														1
GGC	-	-	2	1																													3
GGT	-	-	1																														1
TCG	-	-	1																														1
TGC	-	-		1																													1
AATAA	1																																1
CCACG	1																																1
CCCGG	1																																1
CGCGG	1																																1
GGCGC	1																																1
TTTAT	1																																1
AACTAC				1																													1
ATATGA			1																														1
CACCAG	1																																1
CGACTT	1																																1
CGGTGG	1																																1
GACGAA	1																																1
GCTCCG		1																															1
GGCCAG	1																																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2					2			1						1	6
AC/GT	-	-	-		1																												1
CG/CG	-	-	-	4	1																												5
ACC/GGT	-	-	1																														1
ACG/CGT	-	-	2																														2
AGC/CTG	-	-	4	1																													5
CCG/CGG	-	-	8	1																													9
AAAAT/ATTTT	2																																2
ACGCC/CGTGG	1																																1
CCCGG/CCGGG	1																																1
CCGCG/CGCGG	2																																2
AACTAC/AGTTGT				1																													1
AAGACG/CGTCTT	1																																1
AAGTCG/ACTTCG	1																																1
AATATG/ATATTC			1																														1
ACCAGC/CTGGTG	1																																1
ACCGCC/CGGTGG	1																																1
AGCCGG/CCGGCT		1																															1
AGGGCC/CCCTGG	1																																1
