Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-76/megassr/results/hub_GCF_025544815.1/fasta/hub_GCF_025544815.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              93
Total size of examined sequences (bp):           3727098
Total number of identified SSRs:                 23
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	1
3	6
4	1
5	3
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																														1	1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																					1		1								2
CG	-	-	-	1																																												1
ATT	-	-	1																																													1
CAC	-	-	1																																													1
CAG	-	-	1																																													1
CCG	-	-	1																																													1
CGG	-	-	1																																													1
TGG	-	-	1																																													1
AATT	-	1																																														1
AATAA	1																																															1
GCGGC	2																																															2
AAAGCG	1																																															1
CAGACG	1																																															1
CCAGCC	1																																															1
CCGCGG	1																																															1
CCTGAA		1																																														1
GACGAA	1																																															1
GCTGGC	1																																															1
TCTGGT		1																																														1
TTTTTA	1																																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																					1		1								2
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																														1	1
CG/CG	-	-	-	1																																												1
AAT/ATT	-	-	1																																													1
ACC/GGT	-	-	2																																													2
AGC/CTG	-	-	1																																													1
CCG/CGG	-	-	2																																													2
AATT/AATT	-	1																																														1
AAAAT/ATTTT	1																																															1
CCGCG/CGCGG	2																																															2
AAAAAT/ATTTTT	1																																															1
AAAGCG/CGCTTT	1																																															1
AACCAG/CTGGTT		1																																														1
AACCTG/AGGTTC		1																																														1
AAGACG/CGTCTT	1																																															1
ACGCAG/CGTCTG	1																																															1
AGCCCC/CTGGGG	1																																															1
AGCGCC/CGCTGG	1																																															1
CCGCGG/CCGCGG	1																																															1
