Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-74/megassr/results/hub_GCF_025544775.1/fasta/hub_GCF_025544775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              63
Total size of examined sequences (bp):           3706208
Total number of identified SSRs:                 16
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	1
3	5
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1									1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1						1	2
CG	-	-	-	1																							1
CCG	-	-	2																								2
CGG	-	-	1																								1
CTG	-	-	1																								1
GCT	-	-	1																								1
CTGCG	1																										1
GCGGC	1																										1
ATAAAA	1																										1
CAGACG	1																										1
GACGAA	1																										1
GCCAGC	1																										1
TCTGGC										1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1						1	2
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1									1
CG/CG	-	-	-	1																							1
AGC/CTG	-	-	2																								2
CCG/CGG	-	-	3																								3
AGCGC/CGCTG	1																										1
CCGCG/CGCGG	1																										1
AAAAAT/ATTTTT	1																										1
AAGACG/CGTCTT	1																										1
ACGCAG/CGTCTG	1																										1
AGAGCC/CTCTGG										1																	1
AGCGCC/CGCTGG	1																										1
