Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-87/megassr/results/hub_GCF_025544735.1/fasta/hub_GCF_025544735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              131
Total size of examined sequences (bp):           5175950
Total number of identified SSRs:                 19
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	2
3	4
4	1
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1									1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-									1	1
CG	-	-	-			1																					1
GC	-	-	-	1																							1
CCG	-	-	1																								1
CTG	-	-	2																								2
GTC	-	-	1																								1
TTCT	-	1																									1
CAAAA	1																										1
CCCTT	1																										1
GCGCC	1																										1
ACCATG		1																									1
ACCCGT	1																										1
CACCAG	1																										1
CGACTT	1																										1
GAGTAC	1																										1
GCTGGC	1																										1
TTTTAG	1																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1								1	2
CG/CG	-	-	-	1		1																					2
ACG/CGT	-	-	1																								1
AGC/CTG	-	-	2																								2
CCG/CGG	-	-	1																								1
AAAG/CTTT	-	1																									1
AAAAC/GTTTT	1																										1
AAGGG/CCCTT	1																										1
CCGCG/CGCGG	1																										1
AAAACT/AGTTTT	1																										1
AAGTCG/ACTTCG	1																										1
ACCAGC/CTGGTG	1																										1
ACCATG/ATGGTC		1																									1
ACCCGT/ACGGGT	1																										1
ACGAGT/ACTCGT	1																										1
AGCGCC/CGCTGG	1																										1
