Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-73/megassr/results/hub_GCF_025544695.1/fasta/hub_GCF_025544695.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              83
Total size of examined sequences (bp):           4149254
Total number of identified SSRs:                 18
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	5
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
GC	-	-	-	2	2
TG	-	-	-	1	1
ATC	-	-	1		1
CAG	-	-	1	1	2
CCG	-	-	1		1
GCA	-	-	1		1
AGCAC	1				1
GGTGT	1				1
TCTGT	1				1
AAAGCG	1				1
CGCTGG	1				1
CGGTGG	1				1
CTTCCG	1				1
GAACCA	1				1
GCCAGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
AT/AT	-	-	-	1	1
CG/CG	-	-	-	2	2
AGC/CTG	-	-	2	1	3
ATC/ATG	-	-	1		1
CCG/CGG	-	-	1		1
AACAG/CTGTT	1				1
ACACC/GGTGT	1				1
ACAGC/CTGTG	1				1
AAAGCG/CGCTTT	1				1
AACCAG/CTGGTT	1				1
AAGCGG/CCGCTT	1				1
ACCGCC/CGGTGG	1				1
AGCGCC/CGCTGG	2				2
