Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-72/megassr/results/hub_GCF_025544655.1/fasta/hub_GCF_025544655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              329
Total size of examined sequences (bp):           3867537
Total number of identified SSRs:                 16
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	1
4	3
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG	-	-	-	1								1
AT	-	-	-	1								1
GT	-	-	-	1								1
ACC	-	-	1									1
TATC	-								1			1
TCTA	-							1				1
TGTC	-										1	1
AATTA	1											1
CGATA	1											1
TTTTA	1											1
ATAAAA	1											1
CTGTTG					1							1
GTGCTG			1									1
TCCTTA								1				1
TGGAGC								1				1
TTTTAA		1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AC/GT	-	-	-	1								1
AG/CT	-	-	-	1								1
AT/AT	-	-	-	1								1
ACC/GGT	-	-	1									1
ACAG/CTGT	-										1	1
AGAT/ATCT	-							1	1			2
AAAAT/ATTTT	1											1
AAATT/AATTT	1											1
ACGAT/ATCGT	1											1
AAAAAT/ATTTTT	1											1
AAAATT/AATTTT		1										1
AACAGC/CTGTTG					1							1
AAGGAT/ATCCTT								1				1
ACCAGC/CTGGTG			1									1
AGCTCC/AGCTGG								1				1
