Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-70/megassr/results/hub_GCF_025536615.1/fasta/hub_GCF_025536615.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              122
Total size of examined sequences (bp):           4099363
Total number of identified SSRs:                 24
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	2
3	7
5	2
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-													1																														1
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1																																						1	2
AT	-	-	-	1																																																								1
CG	-	-	-	1																																																								1
CAG	-	-	1																																																									1
CCG	-	-	1																																																									1
CGG	-	-	1																																																									1
GCA	-	-	1																																																									1
GCG	-	-	1																																																									1
TCA	-	-	1																																																									1
TGG	-	-				1																																																						1
ACAGA	1																																																											1
AGTTA					1																																																							1
AAAGCG	1																																																											1
CCGCAT	1																																																											1
CCTGAA	1																																																											1
CGCTGG	1																																																											1
CGTCTG	1																																																											1
CTTCCG	1																																																											1
GCTGGC	1																																																											1
TGCTGA	1																																																											1
TGGTTC		1																																																										1
TTTCCG				1																																																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-													1																														1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1																																						1	2
AT/AT	-	-	-	1																																																								1
CG/CG	-	-	-	1																																																								1
ACC/GGT	-	-				1																																																						1
AGC/CTG	-	-	2																																																									2
ATC/ATG	-	-	1																																																									1
CCG/CGG	-	-	3																																																									3
AACAG/CTGTT	1																																																											1
AACTT/AAGTT					1																																																							1
AAACGG/CCGTTT				1																																																								1
AAAGCG/CGCTTT	1																																																											1
AACCAG/CTGGTT		1																																																										1
AACCTG/AGGTTC	1																																																											1
AAGCGG/CCGCTT	1																																																											1
ACGCAG/CGTCTG	1																																																											1
AGCATC/ATGCTG	1																																																											1
AGCGCC/CGCTGG	2																																																											2
ATCCGC/ATGCGG	1																																																											1
