Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-86/megassr/results/hub_GCF_025536595.1/fasta/hub_GCF_025536595.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              163
Total size of examined sequences (bp):           5027503
Total number of identified SSRs:                 29
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	8
5	5
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	2							2
GC	-	-	-	5							5
CCG	-	-	1								1
CGC	-	-	1								1
CGG	-	-	1								1
CTG	-	-	1								1
GCA	-	-	1								1
GCT	-	-	1								1
GGA	-	-		1							1
TCT	-	-		1							1
CGCGC	1										1
CGTCG	1										1
GCGCT	1										1
TATTT	1										1
TGTAT										1	1
CTGGCG	2										2
GAAGTC	1										1
GCCAGC	1										1
GCGATG	1										1
GCTCCG	1										1
GCTGGC	1										1
GCTTCC	1										1
GTGCCT					1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	7							7
AAG/CTT	-	-		1							1
AGC/CTG	-	-	3								3
AGG/CCT	-	-		1							1
CCG/CGG	-	-	3								3
AAAAT/ATTTT	1										1
AATAC/ATTGT										1	1
ACGCG/CGCGT	1										1
AGCGC/CGCTG	1										1
CCGCG/CGCGG	1										1
AAGCGG/CCGCTT	1										1
AAGTCG/ACTTCG	1										1
ACAGGC/CCTGTG					1						1
AGCCGG/CCGGCT	1										1
AGCGCC/CGCTGG	4										4
ATCGCC/ATGGCG	1										1
