Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-85/megassr/results/hub_GCF_025536465.1/fasta/hub_GCF_025536465.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              92
Total size of examined sequences (bp):           4855628
Total number of identified SSRs:                 22
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	9
3	4
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										1	1
AG	-	-	-	1																								1
GA	-	-	-	1																								1
GC	-	-	-	1		1																						2
GT	-	-	-	2																								2
TG	-	-	-	1			1	1																				3
CCG	-	-	1																									1
CTG	-	-	2																									2
TGC	-	-	1																									1
GAGGA	1																											1
GGCGC	1																											1
TTTCC	1																											1
GAAGTC	1																											1
GCGCCA	1																											1
GCGTCT	1																											1
GTGGTC	1																											1
TGGTCA				1																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										1	1
AC/GT	-	-	-	3			1	1																				5
AG/CT	-	-	-	2																								2
CG/CG	-	-	-	1		1																						2
AGC/CTG	-	-	3																									3
CCG/CGG	-	-	1																									1
AAAGG/CCTTT	1																											1
AGAGG/CCTCT	1																											1
CCGCG/CGCGG	1																											1
AAGTCG/ACTTCG	1																											1
ACCACG/CGTGGT	1																											1
ACCATG/ATGGTC				1																								1
ACGCAG/CGTCTG	1																											1
AGCGCC/CGCTGG	1																											1
