Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-69/megassr/results/hub_GCF_025536455.1/fasta/hub_GCF_025536455.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              189
Total size of examined sequences (bp):           4787997
Total number of identified SSRs:                 28
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	9
3	10
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
AC	-	-	-						1													1
CG	-	-	-	4																		4
GC	-	-	-	4																		4
CAG	-	-	3																			3
CCG	-	-	2																			2
CGA	-	-	1																			1
CGC	-	-	1																			1
CGG	-	-	1																			1
GCG	-	-	1																			1
GGA	-	-	1																			1
TAGAA	1																					1
TCCTT	1																					1
CGACTT	1																					1
CTGGCG	1																					1
GCGTCT	1																					1
GCTGGC	1																					1
GGCTCA	1																					1
TTGCGA	1																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
AC/GT	-	-	-						1													1
CG/CG	-	-	-	8																		8
ACG/CGT	-	-	1																			1
AGC/CTG	-	-	3																			3
AGG/CCT	-	-	1																			1
CCG/CGG	-	-	5																			5
AAAGG/CCTTT	1																					1
AATAG/ATTCT	1																					1
AAGTCG/ACTTCG	1																					1
AATCGC/ATTGCG	1																					1
ACGCAG/CGTCTG	1																					1
AGCCTG/AGGCTC	1																					1
AGCGCC/CGCTGG	2																					2
