Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-68/megassr/results/hub_GCF_025536435.1/fasta/hub_GCF_025536435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              584
Total size of examined sequences (bp):           4881387
Total number of identified SSRs:                 32
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	10
3	11
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																																																														1	1
AT	-	-	-	1																																																																																																																																												1
CG	-	-	-	4																																																																																																																																												4
CT	-	-	-		1																																																																																																																																											1
GC	-	-	-	4																																																																																																																																												4
ACG	-	-	1																																																																																																																																													1
CCG	-	-	2																																																																																																																																													2
CGC	-	-	1																																																																																																																																													1
CGG	-	-	1																																																																																																																																													1
CTG	-	-	2																																																																																																																																													2
GCT	-	-	1																																																																																																																																													1
GGC	-	-	1																																																																																																																																													1
GTG	-	-	1																																																																																																																																													1
TCG	-	-	1																																																																																																																																													1
CCCCT	1																																																																																																																																															1
CCCGG	1																																																																																																																																															1
GAGAG	1																																																																																																																																															1
TGGCG	1																																																																																																																																															1
TTCTA	1																																																																																																																																															1
AGCGCC	1																																																																																																																																															1
CAGACG	1																																																																																																																																															1
CCTGAG		1																																																																																																																																														1
CGACTT	1																																																																																																																																															1
GCTGGC	1																																																																																																																																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																																																														1	1
AG/CT	-	-	-		1																																																																																																																																											1
AT/AT	-	-	-	1																																																																																																																																												1
CG/CG	-	-	-	8																																																																																																																																												8
ACC/GGT	-	-	1																																																																																																																																													1
ACG/CGT	-	-	2																																																																																																																																													2
AGC/CTG	-	-	3																																																																																																																																													3
CCG/CGG	-	-	5																																																																																																																																													5
AATAG/ATTCT	1																																																																																																																																															1
ACGCC/CGTGG	1																																																																																																																																															1
AGAGG/CCTCT	1																																																																																																																																															1
AGGGG/CCCCT	1																																																																																																																																															1
CCCGG/CCGGG	1																																																																																																																																															1
AAGTCG/ACTTCG	1																																																																																																																																															1
ACGCAG/CGTCTG	1																																																																																																																																															1
AGCCTG/AGGCTC		1																																																																																																																																														1
AGCGCC/CGCTGG	2																																																																																																																																															2
