Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-67/megassr/results/hub_GCF_025536415.1/fasta/hub_GCF_025536415.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              114
Total size of examined sequences (bp):           4748965
Total number of identified SSRs:                 35
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	10
5	7
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	5	5
GC	-	-	-	4	4
ACG	-	-	1		1
CAG	-	-	3		3
CGG	-	-	1		1
GCG	-	-	1		1
GGA	-	-	1		1
GGC	-	-	2		2
TCG	-	-	1		1
AATGG		1			1
ATGGA	1				1
CGCCA	1				1
CGTGC	1				1
GGAAT	1				1
GTGGA	1				1
TATTT	1				1
CGCTGG	1				1
CTGGCG	1				1
GAAGTC	1				1
GCGCCA	1				1
GCGTCT	1				1
GCTCCT	1				1
GCTGGC	1				1
GGCTCA	1				1
GTGGTT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	9	9
ACG/CGT	-	-	2		2
AGC/CTG	-	-	3		3
AGG/CCT	-	-	1		1
CCG/CGG	-	-	4		4
AAAAT/ATTTT	1				1
AATGG/ATTCC	2	1			3
ACGCC/CGTGG	1				1
ACGGC/CCGTG	1				1
ACTCC/AGTGG	1				1
AACCAC/GGTTGT	1				1
AAGTCG/ACTTCG	1				1
ACGCAG/CGTCTG	1				1
AGCAGG/CCTGCT	1				1
AGCCTG/AGGCTC	1				1
AGCGCC/CGCTGG	4				4
