Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-66/megassr/results/hub_GCF_025536395.1/fasta/hub_GCF_025536395.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              199
Total size of examined sequences (bp):           4825766
Total number of identified SSRs:                 25
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	8
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	2	2
GC	-	-	-	4	4
TA	-	-	-	1	1
CAG	-	-	1		1
CCG	-	-	2		2
CGA	-	-	1		1
CGC	-	-	2		2
GCT	-	-	1		1
GGC	-	-	1		1
CGTGC	1				1
TAGAA	1				1
TGGCG	1				1
AGCGCC	1				1
CAGACG	1				1
CCTGAG	1				1
CGACTT	1				1
GCCAGC	1				1
GGCGAT	1				1
TCGCAA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	6	6
ACG/CGT	-	-	1		1
AGC/CTG	-	-	2		2
CCG/CGG	-	-	5		5
AATAG/ATTCT	1				1
ACGCC/CGTGG	1				1
ACGGC/CCGTG	1				1
AAGTCG/ACTTCG	1				1
AATCGC/ATTGCG	1				1
ACGCAG/CGTCTG	1				1
AGCCTG/AGGCTC	1				1
AGCGCC/CGCTGG	2				2
ATCGCC/ATGGCG	1				1
