Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-78/megassr/results/hub_GCF_025536375.1/fasta/hub_GCF_025536375.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              150
Total size of examined sequences (bp):           4305846
Total number of identified SSRs:                 25
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	4
3	5
4	1
5	3
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
AT	-	-	-	1																1
CA	-	-	-	1																1
CG	-	-	-	1																1
GC	-	-	-	1																1
CAG	-	-		1																1
CCG	-	-	1																	1
CTG	-	-	1																	1
GCT	-	-	1																	1
TGA	-	-	1																	1
GCCG	-	1																		1
ACACC	1																			1
GTGCT	1																			1
TCTGT	1																			1
AAAGCG	1																			1
CAGGAA	1																			1
CCAGCG	2																			2
GCAGGA								1												1
GCGGAA	1																			1
GCTGGC	1																			1
TAAGAT		1																		1
TGATAG		1																		1
TGGCGG	1																			1
TGGTTC	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
AC/GT	-	-	-	1																1
AT/AT	-	-	-	1																1
CG/CG	-	-	-	2																2
AGC/CTG	-	-	2	1																3
ATC/ATG	-	-	1																	1
CCG/CGG	-	-	1																	1
CCGG/CCGG	-	1																		1
AACAG/CTGTT	1																			1
ACACC/GGTGT	1																			1
ACAGC/CTGTG	1																			1
AAAGCG/CGCTTT	1																			1
AACAGG/CCTGTT	1																			1
AACCAG/CTGGTT	1																			1
AAGATT/AATCTT		1																		1
AAGCGG/CCGCTT	1																			1
ACCGCC/CGGTGG	1																			1
ACTATC/AGTGAT		1																		1
AGCAGG/CCTGCT								1												1
AGCGCC/CGCTGG	3																			3
