Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-77/megassr/results/hub_GCF_025536355.1/fasta/hub_GCF_025536355.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              397
Total size of examined sequences (bp):           4150429
Total number of identified SSRs:                 23
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	3
3	5
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1						1																														2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																1																				1	2
GC	-	-	-	2																																																		2
TG	-	-	-	1																																																		1
ATC	-	-	1																																																			1
CGG	-	-	1																																																			1
CTG	-	-	1	1																																																		2
GCA	-	-	1																																																			1
AGCAC	1																																																					1
CCGGA	1																																																					1
GGTGT	1																																																					1
TCTGT	1																																																					1
CATCAC	1																																																					1
CGCTGG	1																																																					1
CTATCA		1																																																				1
GCCAGC	1																																																					1
GCGGAA	1																																																					1
TCGCTT	1																																																					1
TGGTTC	1																																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1						1																														2
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																1																				1	2
AC/GT	-	-	-	1																																																		1
CG/CG	-	-	-	2																																																		2
AGC/CTG	-	-	2	1																																																		3
ATC/ATG	-	-	1																																																			1
CCG/CGG	-	-	1																																																			1
AACAG/CTGTT	1																																																					1
ACACC/GGTGT	1																																																					1
ACAGC/CTGTG	1																																																					1
ACCGG/CCGGT	1																																																					1
AAAGCG/CGCTTT	1																																																					1
AACCAG/CTGGTT	1																																																					1
AAGCGG/CCGCTT	1																																																					1
ACCATC/ATGGTG	1																																																					1
ACTATC/AGTGAT		1																																																				1
AGCGCC/CGCTGG	2																																																					2
