Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-71/megassr/results/hub_GCF_025536335.1/fasta/hub_GCF_025536335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              211
Total size of examined sequences (bp):           4252529
Total number of identified SSRs:                 27
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	5
3	7
5	3
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																											1	1
AT	-	-	-	1																																																									1
CA	-	-	-	1																																																									1
GC	-	-	-	2																																																									2
TA	-	-	-	1																																																									1
CAC	-	-					1																																																						1
CAG	-	-	1	1																																																									2
CCG	-	-	1																																																										1
CTC	-	-	1																																																										1
GCT	-	-	1																																																										1
TGA	-	-	1																																																										1
AGCAC	1																																																												1
GGTGT	1																																																												1
TCTGT	1																																																												1
AAAGCG	1																																																												1
AAATAA	1																																																												1
AATAAA			1																																																										1
ATCAGT								1																																																					1
CCAGCG	1																																																												1
CTTCCG	1																																																												1
GAACCA	1																																																												1
GCTGGC	1																																																												1
TATCAG							1																																																						1
TGATGT		1																																																											1
TGTTTG	1																																																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																											1	1
AC/GT	-	-	-	1																																																									1
AT/AT	-	-	-	2																																																									2
CG/CG	-	-	-	2																																																									2
ACC/GGT	-	-					1																																																						1
AGC/CTG	-	-	2	1																																																									3
AGG/CCT	-	-	1																																																										1
ATC/ATG	-	-	1																																																										1
CCG/CGG	-	-	1																																																										1
AACAG/CTGTT	1																																																												1
ACACC/GGTGT	1																																																												1
ACAGC/CTGTG	1																																																												1
AAAAAT/ATTTTT	1		1																																																										2
AAACAC/GTGTTT	1																																																												1
AAAGCG/CGCTTT	1																																																												1
AACATC/ATGTTG		1																																																											1
AACCAG/CTGGTT	1																																																												1
AAGCGG/CCGCTT	1																																																												1
ACTGAT/AGTATC							1	1																																																					2
AGCGCC/CGCTGG	2																																																												2
