Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-84/megassr/results/hub_GCF_025536315.1/fasta/hub_GCF_025536315.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              266
Total size of examined sequences (bp):           4908826
Total number of identified SSRs:                 29
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	8
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT	-	-	-	1					1
CG	-	-	-	2					2
CT	-	-	-	1					1
GC	-	-	-	3					3
CCG	-	-	1						1
CGG	-	-	4						4
CTG	-	-	1						1
GCA	-	-	1						1
GCG	-	-	1						1
CAGCG	1								1
CGCTG	1								1
CGTCG	1								1
CTGGC	1								1
GCGCG	1								1
GGCGC	1								1
CCTGAG	1								1
CGACTT	1								1
GACAGT	1								1
GCAGTA								1	1
GCGATG	1								1
GCGCCA	1								1
GCTGGC	1								1
TGATAA		1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AG/CT	-	-	-	1					1
AT/AT	-	-	-	1					1
CG/CG	-	-	-	5					5
AGC/CTG	-	-	2						2
CCG/CGG	-	-	6						6
ACGCG/CGCGT	1								1
AGCGC/CGCTG	2								2
AGGCC/CCTGG	1								1
CCGCG/CGCGG	2								2
AAGTCG/ACTTCG	1								1
AATGAT/ATCATT		1							1
ACAGTG/ACTGTC	1								1
ACTGCT/AGCAGT								1	1
AGCCTG/AGGCTC	1								1
AGCGCC/CGCTGG	2								2
ATCGCC/ATGGCG	1								1
