Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-65/megassr/results/hub_GCF_025536295.1/fasta/hub_GCF_025536295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              87
Total size of examined sequences (bp):           5029399
Total number of identified SSRs:                 74
Number of SSR containing sequences:              27
Number of sequences containing more than 1 SSR:  17
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	17
3	23
4	2
5	12
6	20

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CA	-	-	-	1				1
CG	-	-	-	6				6
GC	-	-	-	9	1			10
CAG	-	-	4					4
CCG	-	-	4					4
CGC	-	-	3					3
CGG	-	-	2					2
CTG	-	-	2					2
GCC	-	-	1					1
GCG	-	-	2	1				3
GCT	-	-		1				1
GGC	-	-	2					2
GTG	-	-	1					1
GCTG	-	2						2
AAACA	1							1
CGCCG	2							2
CGGCG	1							1
CGGTT	1							1
GCCGC	1							1
GCGCC	2							2
GCGCG	2							2
GGCGC	1							1
TGCGC	1							1
ACCGGC	2							2
CAGCCC	1							1
CAGCGC	1							1
CCAAGC							1	1
CCACCG	1							1
CCGGCA	1							1
CCGGCG	1							1
CCGGTT	1							1
CGGCAC	1							1
CGGCGA	1							1
CTGGCG	1							1
GCATCG	1							1
GCGCCG	1							1
GCTGGC	2							2
GGTTTT	1							1
GTGTCG							2	2
TGCCGC	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AC/GT	-	-	-	1				1
CG/CG	-	-	-	15	1			16
ACC/GGT	-	-	1					1
AGC/CTG	-	-	6	1				7
CCG/CGG	-	-	14	1				15
AGCC/CTGG	-	2						2
AAAAC/GTTTT	1							1
AACCG/CGGTT	1							1
AGCGC/CGCTG	1							1
CCGCG/CGCGG	9							9
AAAACC/GGTTTT	1							1
AACCGG/CCGGTT	1							1
AAGCCC/CTTGGG							1	1
ACACCG/CGGTGT							2	2
ACCGCC/CGGTGG	1							1
ACCGGC/CCGGTG	4							4
ACGGCG/CCGTCG	1							1
AGCCCC/CTGGGG	1							1
AGCGCC/CGCTGG	4							4
AGCGGC/CCGCTG	1							1
ATCGGC/ATGCCG	1							1
CCGGCG/CCGGCG	2							2
