Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-83/megassr/results/hub_GCF_025536275.1/fasta/hub_GCF_025536275.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              177
Total size of examined sequences (bp):           4997061
Total number of identified SSRs:                 22
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	7
4	3
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CT	-	-	-	1	1	2
GC	-	-	-	2		2
CCG	-	-	1			1
CCT	-	-	1			1
CGC	-	-	1			1
CGT	-	-		1		1
CTG	-	-	2			2
GGC	-	-	1			1
GCTG	-	1				1
TCTT	-	1				1
TTCC	-	1				1
CTCCT	1					1
GAGGA	1					1
CCCCTC	1					1
CTCTGG	1					1
GAAGTC	1					1
GCGTCT	1					1
GCTGGC	1					1
TGGTCA					1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	1	1	2
CG/CG	-	-	-	2		2
ACG/CGT	-	-		1		1
AGC/CTG	-	-	2			2
AGG/CCT	-	-	1			1
CCG/CGG	-	-	3			3
AAAG/CTTT	-	1				1
AAGG/CCTT	-	1				1
AGCC/CTGG	-	1				1
AGAGG/CCTCT	2					2
AAGTCG/ACTTCG	1					1
ACCATG/ATGGTC					1	1
ACGCAG/CGTCTG	1					1
AGAGCC/CTCTGG	1					1
AGCGCC/CGCTGG	1					1
AGGGGG/CCCCCT	1					1
