Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-82/megassr/results/hub_GCF_025536255.1/fasta/hub_GCF_025536255.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              112
Total size of examined sequences (bp):           5081384
Total number of identified SSRs:                 28
Number of SSR containing sequences:              23
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	5
3	9
5	2
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																										1	1
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2																																																																																									2
AT	-	-	-				1																																																																																																					1
CG	-	-	-	2	1																																																																																																							3
GC	-	-	-	1																																																																																																								1
ACG	-	-		1																																																																																																								1
CGG	-	-	3																																																																																																									3
GCA	-	-	1																																																																																																									1
GGC	-	-	2																																																																																																									2
TGA	-	-	2																																																																																																									2
ACGCC	1																																																																																																											1
CAGCG	1																																																																																																											1
CAATAT	1																																																																																																											1
CGACTT	1																																																																																																											1
CGCCAG	1																																																																																																											1
GAACAG			1																																																																																																									1
GAAGCA	1																																																																																																											1
GCTGGC	1																																																																																																											1
GGTAAA	1																																																																																																											1
TGCATA	1																																																																																																											1
TTCAAC	1																																																																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																																										1	1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2																																																																																									2
AT/AT	-	-	-				1																																																																																																					1
CG/CG	-	-	-	3	1																																																																																																							4
ACG/CGT	-	-		1																																																																																																								1
AGC/CTG	-	-	1																																																																																																									1
ATC/ATG	-	-	2																																																																																																									2
CCG/CGG	-	-	5																																																																																																									5
ACGCC/CGTGG	1																																																																																																											1
AGCGC/CGCTG	1																																																																																																											1
AAAGGT/ACCTTT	1																																																																																																											1
AACAGG/CCTGTT			1																																																																																																									1
AACTTC/AAGTTG	1																																																																																																											1
AAGCAG/CTGCTT	1																																																																																																											1
AAGTCG/ACTTCG	1																																																																																																											1
AATATC/ATATTG	1																																																																																																											1
AGCGCC/CGCTGG	2																																																																																																											2
ATATGC/ATATGC	1																																																																																																											1
