Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-70/megassr/results/hub_GCF_025536235.1/fasta/hub_GCF_025536235.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              157
Total size of examined sequences (bp):           4171972
Total number of identified SSRs:                 22
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	4
3	5
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																	1	1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																	1
GC	-	-	-	2																															2
TA	-	-	-			1																													1
TG	-	-	-	1																															1
ATC	-	-	1																																1
CAG	-	-	1																																1
CGG	-	-	1																																1
CTG	-	-		1																															1
GCA	-	-	1																																1
ACAGA	1																																		1
CCGGA	1																																		1
GGTGT	1																																		1
GTGCT	1																																		1
AAAGCG	1																																		1
CATCAC	1																																		1
CGCTGG	1																																		1
CTATCA		1																																	1
CTTCCG	1																																		1
GAACCA	1																																		1
GCTGGC	1																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																	1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																	1	1
AC/GT	-	-	-	1																															1
AT/AT	-	-	-			1																													1
CG/CG	-	-	-	2																															2
AGC/CTG	-	-	2	1																															3
ATC/ATG	-	-	1																																1
CCG/CGG	-	-	1																																1
AACAG/CTGTT	1																																		1
ACACC/GGTGT	1																																		1
ACAGC/CTGTG	1																																		1
ACCGG/CCGGT	1																																		1
AAAGCG/CGCTTT	1																																		1
AACCAG/CTGGTT	1																																		1
AAGCGG/CCGCTT	1																																		1
ACCATC/ATGGTG	1																																		1
ACTATC/AGTGAT		1																																	1
AGCGCC/CGCTGG	2																																		2
