Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-81/megassr/results/hub_GCF_025536215.1/fasta/hub_GCF_025536215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              163
Total size of examined sequences (bp):           4786483
Total number of identified SSRs:                 27
Number of SSR containing sequences:              24
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	8
3	11
5	2
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1																															1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																								1									1	2
CG	-	-	-	4																																															4
GC	-	-	-	4																																															4
CAG	-	-	2																																																2
CCA	-	-	1																																																1
CGA	-	-	1																																																1
CGC	-	-	1																																																1
CGG	-	-	2																																																2
GCT	-	-	1																																																1
GGC	-	-	3																																																3
TGGCG	1																																																		1
TTCTG	1																																																		1
CTGGCG	1																																																		1
GAAGTC	1																																																		1
GCTGGC	1																																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1																															1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																								1									1	2
CG/CG	-	-	-	8																																															8
ACC/GGT	-	-	1																																																1
ACG/CGT	-	-	1																																																1
AGC/CTG	-	-	3																																																3
CCG/CGG	-	-	6																																																6
AACAG/CTGTT	1																																																		1
ACGCC/CGTGG	1																																																		1
AAGTCG/ACTTCG	1																																																		1
AGCGCC/CGCTGG	2																																																		2
