Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-80/megassr/results/hub_GCF_025536175.1/fasta/hub_GCF_025536175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              257
Total size of examined sequences (bp):           5028437
Total number of identified SSRs:                 22
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	6
3	5
4	2
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-													1	1
CG	-	-	-	2																											2
CT	-	-	-	2																											2
GC	-	-	-		1																										1
TC	-	-	-		1																										1
CAG	-	-	1																												1
CGG	-	-	1																												1
CGT	-	-		1																											1
GCA	-	-	1																												1
GGC	-	-	1																												1
AGGG	-	1																													1
GCTG	-	1																													1
GCATT				1																											1
TCCTC	1																														1
CAGACG	1																														1
CGAAAG	1																														1
CTCCGG		1																													1
GAAGTC	1																														1
GCTGGC	1																														1
TGGTCA				1																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-													1	1
AG/CT	-	-	-	2	1																										3
CG/CG	-	-	-	2	1																										3
ACG/CGT	-	-		1																											1
AGC/CTG	-	-	2																												2
CCG/CGG	-	-	2																												2
AGCC/CTGG	-	1																													1
AGGG/CCCT	-	1																													1
AATGC/ATTGC				1																											1
AGAGG/CCTCT	1																														1
AAAGCG/CGCTTT	1																														1
AAGTCG/ACTTCG	1																														1
ACCATG/ATGGTC				1																											1
ACGCAG/CGTCTG	1																														1
AGCCGG/CCGGCT		1																													1
AGCGCC/CGCTGG	1																														1
