Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-79/megassr/results/hub_GCF_025536155.1/fasta/hub_GCF_025536155.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              230
Total size of examined sequences (bp):           4785114
Total number of identified SSRs:                 31
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	11
5	5
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	3					3
GC	-	-	-	3					3
TA	-	-	-	1					1
CCG	-	-	1						1
CGA	-	-	1						1
CGC	-	-	3						3
CGG	-	-	1						1
CTG	-	-	2						2
GCT	-	-	1						1
GGC	-	-	1						1
TCG	-	-	1						1
AGAGA		1							1
CGCCA	1								1
GGCAC	1								1
TAGAA	1								1
TTCTG	1								1
AGCGCC	1								1
GAAAAA								1	1
GAAGTC	1								1
GCTGGC	1								1
GGCGAT	1								1
GGCTGG	1								1
TCGCAA	1								1
TTTCAA	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	1					1
CG/CG	-	-	-	6					6
ACG/CGT	-	-	2						2
AGC/CTG	-	-	3						3
CCG/CGG	-	-	6						6
AACAG/CTGTT	1								1
AAGAG/CTCTT		1							1
AATAG/ATTCT	1								1
ACGCC/CGTGG	1								1
ACGGC/CCGTG	1								1
AAAAAG/CTTTTT								1	1
AAATTG/AATTTC	1								1
AAGTCG/ACTTCG	1								1
AATCGC/ATTGCG	1								1
AGCCCC/CTGGGG	1								1
AGCGCC/CGCTGG	2								2
ATCGCC/ATGGCG	1								1
