Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-78/megassr/results/hub_GCF_025536135.1/fasta/hub_GCF_025536135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              190
Total size of examined sequences (bp):           5084574
Total number of identified SSRs:                 18
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	5
5	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CT	-	-	-			1	1
GC	-	-	-	2	2		4
ACG	-	-		1			1
CAG	-	-	1				1
CCG	-	-	1				1
CGC	-	-	1				1
CTG	-	-	1				1
CCCTC	1						1
ACCATG		1					1
AGGGTG	1						1
CTTTTT	1						1
GAAGTC	1						1
GCAATG	1						1
GCGTCT	1						1
GCTGGC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AG/CT	-	-	-			1	1
CG/CG	-	-	-	2	2		4
ACG/CGT	-	-		1			1
AGC/CTG	-	-	2				2
CCG/CGG	-	-	2				2
AGGGG/CCCCT	1						1
AAAAAG/CTTTTT	1						1
AAGTCG/ACTTCG	1						1
AATGGC/ATTGCC	1						1
ACCATG/ATGGTC		1					1
ACCCTC/AGGGTG	1						1
ACGCAG/CGTCTG	1						1
AGCGCC/CGCTGG	1						1
