Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-77/megassr/results/hub_GCF_025536115.1/fasta/hub_GCF_025536115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              274
Total size of examined sequences (bp):           5110647
Total number of identified SSRs:                 18
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	4
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AC	-	-	-				1	1
AT	-	-	-		1			1
CG	-	-	-	1				1
GA	-	-	-	1				1
GC	-	-	-			1		1
CAG	-	-	1					1
CGG	-	-	1					1
CTG	-	-	2					2
ACATC	1							1
GAAAC	1							1
GGCGC	1							1
TTATT	1							1
ACCATG							1	1
CCAGAA	1							1
GAAGTC	1							1
GCGCCA	1							1
GCGTCT	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AC/GT	-	-	-				1	1
AG/CT	-	-	-	1				1
AT/AT	-	-	-		1			1
CG/CG	-	-	-	1		1		2
AGC/CTG	-	-	3					3
CCG/CGG	-	-	1					1
AAAAT/ATTTT	1							1
AAACG/CGTTT	1							1
ACATC/ATGTG	1							1
CCGCG/CGCGG	1							1
AACCAG/CTGGTT	1							1
AAGTCG/ACTTCG	1							1
ACCATG/ATGGTC							1	1
ACGCAG/CGTCTG	1							1
AGCGCC/CGCTGG	1							1
