Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-76/megassr/results/hub_GCF_025536075.1/fasta/hub_GCF_025536075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              117
Total size of examined sequences (bp):           4904692
Total number of identified SSRs:                 28
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	6
3	6
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1		2																1	4
CG	-	-	-	2		1																																			3
GC	-	-	-	2																																					2
TA	-	-	-	1																																					1
CAG	-	-	1																																						1
CGC	-	-	1																																						1
CGG	-	-	1																																						1
CTG	-	-	1																																						1
GCT	-	-	1																																						1
TGG	-	-	1																																						1
AATCA	1																																								1
ACGCC										1																															1
GCCGG	1																																								1
GCGCG	1																																								1
ACCATG				1																																					1
ATGGTC		1																																							1
CGACTT	1																																								1
CTGGCG	1																																								1
GCGATG	1																																								1
GCTGGC	2																																								2
TTTTTA	1																																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1		2																1	4
AT/AT	-	-	-	1																																					1
CG/CG	-	-	-	4		1																																			5
ACC/GGT	-	-	1																																						1
AGC/CTG	-	-	3																																						3
CCG/CGG	-	-	2																																						2
AAATC/ATTTG	1																																								1
ACGCC/CGTGG										1																															1
CCCGG/CCGGG	1																																								1
CCGCG/CGCGG	1																																								1
AAAAAT/ATTTTT	1																																								1
AAGTCG/ACTTCG	1																																								1
ACCATG/ATGGTC		1		1																																					2
AGCGCC/CGCTGG	3																																								3
ATCGCC/ATGGCG	1																																								1
