Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-69/megassr/results/hub_GCF_025536055.1/fasta/hub_GCF_025536055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              196
Total size of examined sequences (bp):           5096935
Total number of identified SSRs:                 27
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	6
3	13
4	1
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
CG	-	-	-	2	2																	4
GC	-	-	-	2																		2
CCG	-	-	3																			3
CGC	-	-	2																			2
CGG	-	-	2																			2
CTG	-	-	1																			1
GCC	-	-	1																			1
GCG	-	-	1																			1
GGC	-	-	1																			1
TGC	-	-	1																			1
TGG	-	-	1																			1
TTAT	-	1																				1
AAATA	1																					1
AGCGC	1																					1
GAAGTC	1																					1
GCCCCG	1																					1
GCTACT			1																			1
GCTGGC	1																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
CG/CG	-	-	-	4	2																	6
ACC/GGT	-	-	1																			1
AGC/CTG	-	-	2																			2
CCG/CGG	-	-	10																			10
AAAT/ATTT	-	1																				1
AAAAT/ATTTT	1																					1
AGCGC/CGCTG	1																					1
AAGTCG/ACTTCG	1																					1
ACTGCT/AGCAGT			1																			1
AGCGCC/CGCTGG	1																					1
CCCCGG/CCGGGG	1																					1
